CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 242
Accession number AY180905
Name CNHN24
SubtypeB'
CountryChina
Sampling year 2001
PatientCNHN24

AY180905 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EF057102(#981)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy