CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 337
Accession number AY237166
Name TZBFL0170-3-2
SubtypeA1D
CountryTanzania
Sampling year 1996
Patient170-baby

AY237166 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg gcagcgaacg gtgagtacgc tgaaaatttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF442567(#1526)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy