CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 356
Accession number AY314051
Name WC10P-9
SubtypeB
CountryCanada
Sampling year 1996
PatientWC10

AY314051 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY314044(#349) AY314046(#351) AY314048(#353) AY314052(#357) AY314056(#361) AY314059(#364) AY314061(#366) AY314063(#368)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy