CESSHIV-1 database

General information on HIV-1 isolate

# 376

Accession number	AY322187
Name	ML249-3-1997
Subtype	CD
Country	Kenya
Sampling year	1997
Patient	249

AY322187 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg -cagcgaacgg tgagtacgct aaaaattttt tgactagcgg aggctaaaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy