CESSHIV-1 database

General information on HIV-1 isolate

# 1127

Accession number	AY352657
Name	UG266
Subtype	A1D
Country	Uganda
Sampling year	1990
Patient	UG266

AY352657 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag ncggcgactg gtgagtacgc ctaaaatttt tgactagcgg aggctggaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy