CESSHIV-1 database

General information on HIV-1 isolate

# 387

Accession number	AY703908
Name	03ZASK040B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-040

AY703908 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc attttatttg actagcagag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy