CESSHIV-1 database

General information on HIV-1 isolate

# 426

Accession number	AY838568
Name	J112MA
Subtype	C
Country	South Africa
Sampling year	2000
Patient	J112Ma

AY838568 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gcggcggctg gtgagtacgc cattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy