CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1598
Accession number AY856966
Name 335352
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient335352

AY856966 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EF178388(#1689)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy