CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1607
Accession number AY857007
Name 2310435
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient2310435

AY857007 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaattttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EF178417(#1703) EF370176(#1451)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy