CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1631
Accession number AY857042
Name 4050226
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient4050226

AY857042 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggtt tgctgaagcg cgcacagcaa gaggcgaggg gcagcgactg gtgagtacgc tgaaaacttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EF178367(#1684)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy