CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1632
Accession number AY857044
Name 4164371
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient4164371

AY857044 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgs caat--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

EF178376(#1686)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy