CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1649
Accession number AY857123
Name 7645574
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient7645574

AY857123 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcrcagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF178339(#1674)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy