CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1653
Accession number AY857184
Name 9835043
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient9835043

AY857184 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caatt-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB371864(#3497) EF178346(#1676)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy