CESSHIV-1 database

General information on HIV-1 isolate

# 518

Accession number	AY878060
Name	03ZASK097B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-097

AY878060 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgaccagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy