CESSHIV-1 database

General information on HIV-1 isolate

# 521

Accession number	AY878063
Name	03ZASK019B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-019

AY878063 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacgcggcaa gaggcgaggg g-ggcggctgg tgagtacgcc aattttattt tgactagcgg aggctagagg gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy