CESSHIV-1 database

General information on HIV-1 isolate

# 429

Accession number	AY901966
Name	03ZASK036B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-036

AY901966 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc tttt-atttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy