CESSHIV-1 database

General information on HIV-1 isolate

# 442

Accession number	AY901979
Name	04ZASK163B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-163

AY901979 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg gggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy