CESSHIV-1 database

General information on HIV-1 isolate

# 457

Accession number	DQ011167
Name	04ZASK142B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-142

DQ011167 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcagcag gaggcgaggg gcggcggctg gtgagtacgc caattttatt tgactagcag aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy