CESSHIV-1 database

General information on HIV-1 isolate

# 465

Accession number	DQ011175
Name	03ZASK005B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-005

DQ011175 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy