CESSHIV-1 database

General information on HIV-1 isolate

# 468

Accession number	DQ011178
Name	04ZASK150B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-150

DQ011178 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgagg ggaaggcggc tggtgagtac gccaatttta tttgactagc ggaggctaga aggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy