CESSHIV-1 database

General information on HIV-1 isolate

# 486

Accession number	DQ056416
Name	04ZASK176B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-176

DQ056416 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy