CESSHIV-1 database

General information on HIV-1 isolate

# 576

Accession number	DQ085872
Name	BREPM12313
Subtype	CRF28_BF
Country	Brazil
Sampling year	1999
Patient	12313

DQ085872 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgactg gtgagtacgc caaatttttt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy