CESSHIV-1 database

General information on HIV-1 isolate

# 493

Accession number	DQ093589
Name	03ZASK232B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	232B1

DQ093589 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gagcggcggc tggtgagtac gccaaacttt tatttgacta gcggaggcta gaaggagaga 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy