CESSHIV-1 database

General information on HIV-1 isolate

# 501

Accession number	DQ093597
Name	03ZASK223B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	223B1

DQ093597 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggctaggag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy