CESSHIV-1 database

General information on HIV-1 isolate

# 505

Accession number	DQ093601
Name	03ZASK211B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	211B1

DQ093601 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy