CESSHIV-1 database

General information on HIV-1 isolate

# 552

Accession number	DQ164115
Name	04ZAPS161B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	161B1

DQ164115 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AB097871(#270) AY049708(#231) AY049710(#233) AY049711(#234) DQ093593(#497) DQ351221(#620) DQ369998(#664)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy