CESSHIV-1 database

General information on HIV-1 isolate

# 563

Accession number	DQ164126
Name	04ZAPS206B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	206B1

DQ164126 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcggctgg tgagtacgcc tttt-atttga ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy