CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1432
Accession number DQ167216
Name EST2002_394
SubtypeA1B
CountryEstonia
Sampling year 2002
Patient394

DQ167216 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tg-tgaggtgc acacagcaag aggcgagag-c ggcgactggt gagtacgcct aaagatcttt gactagcgga ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012