CESSHIV-1 database

General information on HIV-1 isolate

# 1240

Accession number	DQ275662
Name	02ZAPS007MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-007M

DQ275662 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctaaagtg cacttggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy