CESSHIV-1 database

General information on HIV-1 isolate

# 637

Accession number	DQ351238
Name	03ZAPS119MB1
Subtype	A1C
Country	South Africa
Sampling year	2003
Patient	119MB

DQ351238 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AY901970(#433) DQ275642(#1220) EF514713(#1022)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy