CESSHIV-1 database

General information on HIV-1 isolate

# 658

Accession number	DQ369992
Name	05ZASK244B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	244B1

DQ369992 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc tattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy