CESSHIV-1 database

General information on HIV-1 isolate

# 689

Accession number	DQ396367
Name	03ZAPS024MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	PS-024M

DQ396367 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy