CESSHIV-1 database

General information on HIV-1 isolate

# 691

Accession number	DQ396369
Name	03ZAPS123MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	123MB

DQ396369 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ093587(#491) DQ275646(#1224) DQ351223(#622)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy