CESSHIV-1 database

General information on HIV-1 isolate

# 692

Accession number	DQ396370
Name	03ZAPS122MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	122MB

DQ396370 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggctaggag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy