CESSHIV-1 database

General information on HIV-1 isolate

# 713

Accession number	DQ396391
Name	03ZAPS143MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	143MB

DQ396391 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcgactg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy