CESSHIV-1 database

General information on HIV-1 isolate

# 716

Accession number	DQ396394
Name	04ZAPS177MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	177MB

DQ396394 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaaatttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy