CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 963
Accession number DQ845388
Name 02CM-A1394
SubtypeCRF13_cpx
CountryCameroon
Sampling year 2002

DQ845388 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacagcaag aggcgagggg cggcgactgg tgagtacgcc gaaattttct tgactagcgg aggctagaag tagaaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012