CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 828
Accession number DQ853436
Name 14294.1
SubtypeB
CountryUSA
Sampling year 2000
PatientPIC1362

DQ853436 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

DQ853438(#830) DQ853449(#831) DQ853450(#832) DQ853451(#833) DQ853452(#834) DQ853453(#835) DQ853454(#836) DQ853459(#841) DQ853460(#842) DQ853461(#843) DQ853463(#845) DQ853465(#847) DQ853466(#1434) DQ853467(#1435) DQ853468(#1436) DQ853470(#1438) DQ853471(#1439) DQ853472(#1440) DQ853473(#1441) DQ853475(#1443)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy