CESSHIV-1 database

General information on HIV-1 isolate

# 829

Accession number	DQ853437
Name	14297.1
Subtype	B
Country	USA
Sampling year	2000
Patient	PIC1362

DQ853437 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcggggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy