CESSHIV-1 database

General information on HIV-1 isolate

# 1377

Accession number	EF119579
Name	No2259
Subtype	A
Country	Russia
Submitted to NCBI	2006
Patient	(patient No2259)

EF119579 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc taaagatttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF193277(#80) FJ437009(#1248) FJ437011(#1250) FJ437012(#1251) FJ437013(#1252) FJ437015(#1254) FJ437016(#1255) FJ437018(#1257) FJ437024(#1263) FJ437025(#1264) FJ503051(#1270) FJ503053(#1272) FJ503055(#1274) FJ503056(#1275) FJ503057(#1276) FJ503058(#1277)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy