CESSHIV-1 database

General information on HIV-1 isolate

# 1615

Accession number	EF178328
Name	MS2004_37_030
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (5074692)

EF178328 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY508141(#3532) AY856964(#1597) AY857063(#1637) EF178426(#1707) EF514707(#1017) EF514708(#1018) FJ195089(#1201) U43096(#2501) U89865(#2598) Z11530(#2600)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy