CESSHIV-1 database

General information on HIV-1 isolate

# 1672

Accession number	EF178333
Name	MS2004_37_035
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (3274602)

EF178333 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY857019(#1619) AY857028(#1626) EF178356(#1680)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy