CESSHIV-1 database

General information on HIV-1 isolate

# 1776

Accession number	EF370336
Name	05LSgH5_2719
Subtype	B
Country	South Korea
Sampling year	2005
Patient	LSgH

EF370336 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

FJ460499(#1211) FJ460500(#1212)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy