CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 999
Accession number EU000509
Name INDNARI-0218437 clone 1
SubtypeBC
CountryIndia
Sampling year 2002
Patient7

EU000509 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga gg-ggcgactg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EU000510(#1000) EU000511(#1001)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy