CESSHIV-1 database

General information on HIV-1 isolate

# 1875

Accession number	EU047679
Name	06CJI10_3158
Subtype	B Korean
Country	South Korea
Sampling year	2006
Patient	CJI

EU047679 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc aagaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF370220(#1716) EU047680(#1876)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy