CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1049
Accession number EU735535
Name 04BRRJ179
SubtypeCRF39_BF
CountryBrazil
Sampling year 2004

EU735535 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

EF514706(#1016)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy