CESSHIV-1 database

General information on HIV-1 isolate

# 1111

Accession number	FJ213783
Name	UY03_3389
Subtype	CRF38_BF1
Country	Uruguay
Sampling year	2003
Patient	3389

FJ213783 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy