CESSHIV-1 database

General information on HIV-1 isolate

# 2020

Accession number	FJ496072
Name	04013226_2_flA8
Subtype	B
Country	USA
Sampling year	2002
Patient	04013226

FJ496072 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaacg cgcgcggcaa gaggcgaggg gtacggcgac tggtgagtac gccaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496073(#2021) FJ496074(#2022) FJ496075(#2023) FJ496076(#2024) FJ496077(#2025) FJ496078(#2026) FJ496079(#2027) FJ496080(#2028)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy