CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2614
Accession number FJ496158
Name WEAU_flA11
SubtypeB
CountryUSA
Sampling year 1990
PatientWEAU0575

FJ496158 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

FJ496159(#2615) FJ496160(#2616) FJ496161(#2617) FJ496162(#2618) FJ496163(#2619) FJ496164(#2620) FJ496165(#2621) FJ496166(#2622) U21135(#29)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy