CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2640
Accession number FJ496184
Name WITO_flH3
SubtypeB
CountryUSA
Sampling year 2000
PatientWITO4160

FJ496184 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcagcgactg gtgagtacgc tgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

FJ496167(#2623) FJ496168(#2624) FJ496169(#2625) FJ496170(#2626) FJ496171(#2627) FJ496172(#2628) FJ496173(#2629) FJ496174(#2630) FJ496175(#2631) FJ496176(#2632) FJ496177(#2633) FJ496178(#2634) FJ496179(#2635) FJ496180(#2636) FJ496181(#2637) FJ496182(#2638) FJ496183(#2639)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy